Photos from the build & mod process. This will be green in the old fashioned sense of the word; no more (or less) earth friendly than any other computer.
Here's a pic to get started.

This will be green in the old fashioned sense of the word; no more (or less) earth friendly than any other computer.

The exploded view.

This is the top rear of the chassis where I will cut another hole for the exhaust fan. Maximum size for the fan will be 90mm or 92mm.

This shows the drive bays; 1 5.25'', 2 external 3.5" & 1 internal 3.5". The HDD mounts in the internal bay which is vertical against the front of the chassis at the right. Eventually I'd like to relocate it to the lower 3.5" bay and cover the external slot for FDD. This would allow space for an intake fan where the HDD currently mounts if I decide I want one.

Paints for the build seen here with my able assistant. Left to right they are Little Mister, primer gray, black & Grabber Green.

Exhaust holes cut in Chassis, Case, & plastic trim piece on top. These holes are pretty ragged but I plan smooth them as best I can and hide whatever doesn't look good!

Here's the blow hole through both steel layers; the chassis & the case. The mobo tray is left out of all these photos. The plastic piece w/ the grill locks into the slots seen on top of the case.

I switched to the short-strand fiberglass filler - what I should have been using in the first place (Thanks Bill Owens!) This will cover the second 3.5" drive bay which I will use for the HDD. (Some sanding required!) I decided to affix the screen grill to the top cover permanently w/ epoxy. I will probably blend it with the Bondo. At that point I may remove the screws and fill those holes as well.

Here's the case & chassis side by side. The shape of the window makes the best use of space available. I could have gone w/ a more regular shape but I wanted to open it up as much as possible w/out showing the side of the PSU or drive bays. *updated to add* This was when I was hoping to find a PSU to fit the original location that would provide the power I want. I've since scrapped that idea and ordered an Ultra LS600 which will most likely show slightly through the window. I've removed the sheet metal piece that is seen here between the drive bays and the back of the chassis.

Here's the case on the chassis. I've since filed the edges and will go with some u-channel or other window molding.
And that's all I've got so far. This project will take a little while even though it's not particularly technically challenging. I'll be ordering parts as they can be afforded. The weather is also limiting my bondo / sanding / painting. It's been rainy and the temperatures have been lingering in the high 40s the past couple weekends. I don't have an enclosed work space where I can do that sort of thingso I'll just have to wait it out!
I'm going to use a CDR/RW I have on hand initially. Eventualy I'd like to upgrade to a combo DVDR + CDR. I have a sound card that might make its way in there along with a USB add-on card. I want to get a fairly large HDD but we'll have to see what's available & affordable when I get to that step! I'm looking at an AMD dual core CPU with a compatible mobo again depending on what's available & affordable. I've got my eye on a card reader / fan controller for the 3.5" bay. I'm planning to splurge on a couple 16mm Anti-Vandal switches for power & reset. Other fun things will be Cold Cathode lighting, LED case fans, and UV sleeving for the cables, all in green.
I've read a bit on the best ways to keep the inside of your case cool. It would have been pretty easy to mount an intake fan up front (still would be) but what I've read suggests that it's more important to pull more CFM
out of the case than you push in so I went with an exhaust fan. Is it more important to push as much air as possible OUT of the case rather than pull it IN, fostering a lower pressure environment inside the case? Please take poll below or respond in comments. Thanks!